This page provides information on the rice genome version numbers, nomenclature, population, source, etc.
| Genetic_Stock_Varname | Country_Origin | 3K_Assay_ID | OryzaSNP_accession (as closest) | HDRA_assay_id | K15_subpops_Natpub | K15_subpops_type | K5_grp | PacBio_Build | PacBio_Source | Notes |
| Zhenshan 97 | China | Similar to CX133, B156 |
IRGC 117280 | 986a3c37.0 | XI-1A | ind1A | indica | ZS97RS2.LNNK00000000.fast | HZAU/AGI | MAGIC16 sample @ AGI was from Qifa Zhang, HZAU; IRGC 117280 seed came to IRRI from HZAU; K15 subpop +/- dendrogram placement agree for different source samples |
| Minghui 63 | China | Similar to CX145 | IRGC 117271 | 0491646d.0 | XI-adm | ind-admx | indica | MH63RS2.LNNK00000000.fast | HZAU/AGI | MAGIC16 sample @ AGI was from Qifa Zhang, HZAU; IRGC 117271 seed came to IRRI from HZAU; K15 subpop +/- dendrogram placement agree for different source samples |
| IR 64 | Philippines | Similar to CX230, CX403 |
IRGC 117268 | f66e275e.0 | XI-1B1 | ind1B1 | indica | OsIR64RS1.RWKJ01.fa | CIAT/AGI | OryzaSNP IRGC 117268 sample is "IR 64-21"; MAGIC16 sample was from Lorieux; K15 subpop +/- dendrogram placement agrees for different source samples |
| PR 106::IRGC 53418-1 | India | IRIS_313-11480 | n/a | XI-1B2 | ind1B2 | indica | Os127742RS1.VYIB01.fa | IRGC shipped seed in October 2018 | ||
| GOBOL SAIL (BALAM)::IRGC 26624-2 | Bangladesh | IRIS_313-10985 | n/a | XI-2A | ind2A | indica | Os132424RS1.VXJI01.fa | IRGC shipped seed in October 2018 | ||
| LARHA MUGAD::IRGC 52339-1 | India | IRIS_313-8568 | n/a | XI-2B | ind2B | indica | Os125619RS1.VYIE01.fa | IRGC shipped seed, received by AGI in May 2018 | ||
| LIMA::IRGC 81487-1 | Indonesia | IRIS_313-12048 | n/a | XI-3A | ind3A | indica | Os127564RS1.VXJH01.fa | IRGC shipped seed in October 2018 | ||
| KHAO YAI GUANG::IRGC 65972-1 | Thailand | IRIS_313-11708 | n/a | XI-3B1 | ind3B1 | indica | Os127518RS1.VYIF01.fa | IRGC shipped seed in October 2018 | ||
| LIU XU::IRGC 109232-1 | China | IRIS_313-10239 | XI-3B2 | ind3B2 | indica | Os125827RS2.WGGU01.fa | Seed received by AGI May 2018 | |||
| N 22::IRGC 19379-1 | India | Similar to CX368 | IRGC 117273 | n/a | cA1 | cAus1 (Assam) | Aus | OsN22RS2.LWDA02.fa | McNally group grew the plant, tissue received by AGI June 2015, seed shipped later | The OryzaSNP sample is similar |
| NATEL BORO::IRGC 34749-1 | Bangladesh | IRIS_313-11163 | n/a | CA2 | cAus2 (Bengal) | Aus | Os127652RS1.VYIG01.fa | IRGC shipped seed, received by AGI May 2018 | ||
| ARC 10497::IRGC 12485-1 | India | IRIS_313-8813 | d00c1e13.0 | cB | cBasmati | Aro | Os117425RS1.VYID01.fa | IRGC shipped seed, received by AGI July 2017 | ||
| Azucena | Philippines | Similar to CX151 | IRGC 117264 | f3d9c979.0 | GJ-trop1 | tropA | Trop jap | AzucenRS1.PKQC01.revision.fasta | CIAT/AGI | OryzaSNP IRGC 117264 sample for "Azucena" is from the same source accession IRGC 328 that was used by Emmanuel Guiderdonni and taken to Cirad, MAGIC16 sample was from M Lorieux (IRD); subpopulation grouping and tree placement by a sample from a different source |
| KETAN NANGKA::IRGC 19961-2 | Indonesia | IRIS_313-10841 | n/a | GJ-trop2 | tropB | Trop jap | Os128077RS1.VYIC01.fa | IRGC shipped seed in October 2018 | ||
| CHAO MEO::IRGC 80273-1 | Lao PDR | IRIS_313-12029 | n/a | GJ-subtrp | subtrop | Trop jap | Os132278RS1.VYIH01.fa | IRGC shipped seed, received by AGI July 2017 | ||
| Nipponbare (IRGSP1.0) | Japan | Similar to CX140 | IRGC 117274 | 48d3bc66.0; ff7ace8e.0 |
GJ-temp | temp | Temp jap | GCF_001433935.1_IRGSP-1.0_genomic.fna | IRGSP data, AGI source | MAGIC16 sample is from Wing, IRGC 117274 (Equivalent sample from OryzaSNP, M Yano ->M Wissuwa -> IRRI), K15 subpopulation grouping and tree placement by sample from different source |
| 93-11 | China |