Genome nomenclature

This page provides information on the rice genome version numbers, nomenclature, population, source, etc. 

Genetic_Stock_Varname Country_Origin 3K_Assay_ID OryzaSNP_accession (as closest) HDRA_assay_id K15_subpops_Natpub   K15_subpops_type K5_grp PacBio_Build PacBio_Source Notes
Zhenshan 97 China Similar to CX133,
B156
IRGC 117280 986a3c37.0 XI-1A ind1A indica ZS97RS2.LNNK00000000.fast HZAU/AGI MAGIC16 sample @ AGI was from Qifa Zhang, HZAU; IRGC 117280 seed came to IRRI from HZAU; K15 subpop +/- dendrogram placement agree for different source samples
Minghui 63 China Similar to CX145 IRGC 117271 0491646d.0 XI-adm ind-admx indica MH63RS2.LNNK00000000.fast HZAU/AGI MAGIC16 sample @ AGI was from Qifa Zhang, HZAU; IRGC 117271 seed came to IRRI from HZAU; K15 subpop +/- dendrogram placement agree for different source samples
IR 64 Philippines Similar to CX230,
CX403
IRGC 117268 f66e275e.0 XI-1B1 ind1B1 indica OsIR64RS1.RWKJ01.fa CIAT/AGI OryzaSNP IRGC 117268 sample is "IR 64-21"; MAGIC16 sample was from Lorieux; K15 subpop +/- dendrogram placement agrees for different source samples
PR 106::IRGC 53418-1 India IRIS_313-11480   n/a XI-1B2 ind1B2 indica Os127742RS1.VYIB01.fa IRGC shipped seed in October 2018  
GOBOL SAIL (BALAM)::IRGC 26624-2 Bangladesh IRIS_313-10985   n/a XI-2A ind2A indica Os132424RS1.VXJI01.fa IRGC shipped seed in October 2018  
LARHA MUGAD::IRGC 52339-1 India IRIS_313-8568   n/a XI-2B ind2B indica Os125619RS1.VYIE01.fa IRGC shipped seed, received by AGI in May 2018  
LIMA::IRGC 81487-1 Indonesia IRIS_313-12048   n/a XI-3A ind3A indica Os127564RS1.VXJH01.fa IRGC shipped seed in October 2018  
KHAO YAI GUANG::IRGC 65972-1 Thailand IRIS_313-11708   n/a XI-3B1 ind3B1 indica Os127518RS1.VYIF01.fa IRGC shipped seed in October 2018  
LIU XU::IRGC 109232-1 China IRIS_313-10239     XI-3B2 ind3B2 indica Os125827RS2.WGGU01.fa Seed received by AGI May 2018  
N 22::IRGC 19379-1 India Similar to CX368 IRGC 117273 n/a cA1 cAus1 (Assam) Aus OsN22RS2.LWDA02.fa McNally group grew the plant, tissue received by AGI June 2015, seed shipped later The OryzaSNP sample is similar
NATEL BORO::IRGC 34749-1 Bangladesh IRIS_313-11163   n/a CA2 cAus2 (Bengal) Aus Os127652RS1.VYIG01.fa IRGC shipped seed, received by AGI May 2018  
ARC 10497::IRGC 12485-1 India IRIS_313-8813   d00c1e13.0 cB cBasmati Aro  Os117425RS1.VYID01.fa IRGC shipped seed, received by AGI July 2017  
Azucena Philippines Similar to CX151 IRGC 117264 f3d9c979.0 GJ-trop1 tropA Trop jap AzucenRS1.PKQC01.revision.fasta CIAT/AGI OryzaSNP IRGC 117264 sample for "Azucena" is from the same source accession IRGC 328 that was used by Emmanuel Guiderdonni and taken to Cirad, MAGIC16 sample was from M Lorieux (IRD); subpopulation grouping and tree placement  by a sample from a different source
KETAN NANGKA::IRGC 19961-2 Indonesia IRIS_313-10841   n/a GJ-trop2 tropB Trop jap Os128077RS1.VYIC01.fa IRGC shipped seed in October 2018  
CHAO MEO::IRGC 80273-1 Lao PDR IRIS_313-12029   n/a GJ-subtrp subtrop Trop jap Os132278RS1.VYIH01.fa IRGC shipped seed, received by AGI July 2017  
Nipponbare (IRGSP1.0) Japan Similar to CX140 IRGC 117274 48d3bc66.0;
 ff7ace8e.0
GJ-temp temp Temp jap GCF_001433935.1_IRGSP-1.0_genomic.fna IRGSP data, AGI source MAGIC16 sample is from Wing, IRGC 117274 (Equivalent sample from OryzaSNP,  M Yano ->M Wissuwa -> IRRI), K15 subpopulation grouping and tree placement  by sample from different source
93-11 China